Top Level Name

  ⌊ Superfamily (core) Radical SAM

    ⌊ Subgroup BATS domain containing

  cleavage of the Ca-Cb bond in aromatic amino acids

     ⌊ Family 2-iminoacetate synthase (ThiH)

Total 100% <100%
Functional domains 1523 1523 0
UniProtKB 5834 5834 0
GI 10962 10962 0
Structures 0
Reactions 1
Functional domains of this family were last updated on June 25, 2017
New functional domains were last added to this family on June 22, 2014

Binds a 4Fe-4S cluster that is coordinated by 3 cysteines and an exchangeable S-adenosyl-L-methionine molecule. The first stage of catalysis is reduction of the S-adenosyl-L-methionine to produce methionine and a 5-deoxyadenosin-5-yl radical that is crucial for the conversion of the substrate. Part of the pathway for thiamine biosynthesis.

Yang Y, Jao S, Nanduri S, Starke DW, Mieyal JJ, Qin J

Reactivity of the human thioltransferase (glutaredoxin) C7S, C25S, C78S, C82S mutant and NMR solution structure of its glutathionyl mixed disulfide intermediate reflect catalytic specificity

▸ Abstract

Biochemistry 1998;37(49):17145-17156 | PubMed ID: 9860827

Kriek M, Martins F, Challand MR, Croft A, Roach PL

Thiamine biosynthesis in Escherichia coli: identification of the intermediate and by-product derived from tyrosine

▸ Abstract

Angew Chem Int Ed Engl. 2007;46(48):9223-9226 | PubMed ID: 17969213

Kriek M, Martins F, Leonardi R, Fairhurst SA, Lowe DJ, Roach PL

Thiazole synthase from Escherichia coli: an investigation of the substrates and purified proteins required for activity in vitro

▸ Abstract

J Biol Chem. 2007;282(24):17413-17423 | PubMed ID: 17403671

Challand MR, Martins FT, Roach PL

Catalytic activity of the anaerobic tyrosine lyase required for thiamine biosynthesis in Escherichia coli

▸ Abstract

J Biol Chem 2010;285(8):5240-5248 | PubMed ID: 19923213

Leonardi R, Roach PL

Thiamine biosynthesis in Escherichia coli: in vitro reconstitution of the thiazole synthase activity

▸ Abstract

J Biol Chem 2004;279(17):17054-17062 | PubMed ID: 14757766

Martinez-Gomez NC, Robers M, Downs DM

Mutational analysis of ThiH, a member of the radical S-adenosylmethionine (AdoMet) protein superfamily

▸ Abstract

J Biol Chem 2004;279(39):40505-40510 | PubMed ID: 15271986

Little is currently known about this family of proteins with respect to the key functional residues.

Gathering threshold Bit Score of 381 used, E-value of 1e-112

Static File Downloads

File Name Description Parameters Stats
network.fam301.bs60.mek250K.xgmml One node per sequence network min bit score = 60
max edge count = 250K
size = 130M
num_edges = 250000
num_nodes = 1523
sfld_alignment_fam301.msa Annotated Sequence Alignment, Stockholm format 443 sequences
size: 250K

Total number of functional domains in this group.
Number of Functional Domains that have been manually or automatically been assigned to a family.
Number of Functional Domains that have not been assigned to a family.
Number of structures available from the PDB for members of this group.
Number of Functional Domains with 100% of Conserved Residues
Number of Functional Domains with less than 100% Conserved Residues

Catalyzed Reaction(s)

2-iminoacetate synthase

+ + + + + +
S-adenosyl-L-methionine zwitterion
59789
L-tyrosine zwitterion
58315
NADPH(4-)
57783
dehydroglycine zwitterion
77846
p-cresol
17847
5'-deoxyadenosine
17319
L-methionine zwitterion
57844
NADP(3-)
58349

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