Total 100% <100%
Functional domains 6 6 0
UniProtKB 21 21 0
GI 55 55 0
Structures 0
Reactions 1
Functional domains of this family were last updated on June 10, 2017
New functional domains were last added to this family on June 22, 2014

Proreins in this family are named from the protein that catalyzes the formation of the thioether bond required for production of the sporulation killing factor (SKF) from SkfA. These proteins form the cysteine-methionine thioether bond found in the killing factor; the acceptor amino acid can be hydrophobic, aromatic or a small hydrophilic amino acid but not a larger hydrophilic amino acid, i.e. Met=Ala, Phe, Leu, Tyr>Asn, Ser>>Gln, Glu, Lys. The relative position of Cys and Met in the substrate cannot be inverted, in vitro the thioether bond cannot be made in the absence of the SkfA propeptide, suggesting this is the first reaction in SKF maturation. In vitro, in the absence of a second substrate, cleaves S-adenosyl-L-methionine into Met and 5'-dA.

Fluhe L, Burghaus O, Wieckowski BM, Giessen TW, Linne U, Marahiel MA

Two [4Fe-4S] clusters containing radical SAM enzyme SkfB catalyze thioether bond formation during the maturation of the sporulation killing factor

▸ Abstract

J Am Chem Soc 2013;135(3):959-962 | PubMed ID: 23282011

González-Pastor JE, Hobbs EC, Losick R

Cannibalism by sporulating bacteria

▸ Abstract

Science 2003;301(5632):510-513 | PubMed ID: 12817086

Bruender NA, Bandarian V

SkfB Abstracts a Hydrogen Atom from Cα on SkfA To Initiate Thioether Cross-Link Formation

▸ Abstract

Biochemistry 2016;None(None):None-None | PubMed ID: 27410522

No notes.

Static File Downloads

File Name Description Parameters Stats
network.fam515.bs60.mek250K.xgmml One node per sequence network min bit score = 60
max edge count = 250K
size = 22K
num_edges = 15
num_nodes = 6
sfld_alignment_fam515.msa Annotated Sequence Alignment, Stockholm format 10 sequences
size: 5.8K

Total number of functional domains in this group.
Number of Functional Domains that have been manually or automatically been assigned to a family.
Number of Functional Domains that have not been assigned to a family.
Number of structures available from the PDB for members of this group.
Number of Functional Domains with 100% of Conserved Residues
Number of Functional Domains with less than 100% Conserved Residues

Catalyzed Reaction(s)

thioether cross-link between Cys and Met

+ + + +
cysteine residue
32460
methionine residue
32648
S-adenosyl-L-methionine zwitterion
59789
Cys-Met thioether
132410
5'-deoxyadenosine
17319
L-methionine zwitterion
57844

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