Top Level Name

  ⌊ Superfamily (core) Radical SAM

    ⌊ Subgroup BATS domain containing

  cleavage of the Ca-Cb bond in aromatic amino acids

     ⌊ Family [Fe] hydrogenase maturase (HydG-like)

Total 100% <100%
Functional domains 703 703 0
UniProtKB 1130 1130 0
GI 2229 2229 0
Structures 0
Reactions 1
Functional domains of this family were last updated on June 10, 2017
New functional domains were last added to this family on June 22, 2014

This is one of the three enzymes required for the formation of the [FeFe]-hydrogenase metallocofactor. Recent work suggests that HydG is a multifunctional enzyme that produces tyrosine-derived dehydroglycine (DHG), CN(-), and CO at three well-differentiated catalytic sites.

Given the sequence homology between HydG and ThiH, it is proposed that HydG is specifically involved in the formation of the dithiolate ligand portion of the metallocofactor (with HydE being responsible for the carbon monoxide and cyanate ligands) with two DHG molecules as precursors along with an [FeS] cluster of HydG functioning both as electron shuttle and source of the sulfur atoms.

Recent work by Kuchenreuther et al. suggests that the radical SAM reaction, initiated at an N-terminal 4Fe-4S cluster, generates a tyrosine radical bound to a C-terminal 4Fe-4S cluster. Heterolytic cleavage of this tyrosine radical at the Calpha-Cbeta bond forms a transient 4-oxidobenzyl radical and a dehydroglycine bound to the C-terminal 4Fe-4S cluster. Dinis et al. have shown that this C-terminal bound iron-sulfur cluster is initially [5Fe-5S] and that the fifth labile iron is the site of the Fe(CO)x(CN)y synthon formation.

Pilet E, Nicolet Y, Mathevon C, Douki T, Fontecilla-Camps JC, Fontecave M

The role of the maturase HydG in [FeFe]-hydrogenase active site synthesis and assembly.

▸ Abstract

FEBS Lett 2009;583(3):506-511 | PubMed ID: 19166853

Kuchenreuther JM, Myers WK, Stich TA, George SJ, Nejatyjahromy Y, Swartz JR, Britt RD

A radical intermediate in tyrosine scission to the CO and CN- ligands of FeFe hydrogenase

▸ Abstract

Science 2013;342(6157):472-475 | PubMed ID: 24159045

Kuchenreuther JM, Myers WK, Suess DL, Stich TA, Pelmenschikov V, Shiigi SA, Cramer SP, Swartz JR, Britt RD, George SJ

The HydG enzyme generates an Fe(CO)2(CN) synthon in assembly of the FeFe hydrogenase H-cluster

▸ Abstract

Science 2014;343(6169):424-427 | PubMed ID: 24458644

Dinis P, Suess DL, Fox SJ, Harmer JE, Driesener RC, De La Paz L, Swartz JR, Essex JW, Britt RD, Roach PL

X-ray crystallographic and EPR spectroscopic analysis of HydG, a maturase in [FeFe]-hydrogenase H-cluster assembly

▸ Abstract

Proc Natl Acad Sci U S A 2015;112(5):1362-1367 | PubMed ID: 25605932

Nicolet Y, Pagnier A, Zeppieri L, Martin L, Amara P, Fontecilla-Camps JC

Crystal structure of HydG from Carboxydothermus hydrogenoformans: a trifunctional [FeFe]-hydrogenase maturase

▸ Abstract

Chembiochem 2015;16(3):397-402 | PubMed ID: 25504963

Suess DL, Britt RD

EPR Spectroscopic Studies of [FeFe]-Hydrogenase Maturation

▸ Abstract

Catal Letters 2015;58(12):699-707 | PubMed ID: 26508821

Suess DL, Kuchenreuther JM, De La Paz L, Swartz JR, Britt RD

Biosynthesis of the [FeFe] Hydrogenase H Cluster: A Central Role for the Radical SAM Enzyme HydG

▸ Abstract

Inorg Chem 2015;None(None):None-None | PubMed ID: 26703931

Pagnier A, Martin L, Zeppieri L, Nicolet Y, Fontecilla-Camps JC

CO and CN- syntheses by [FeFe]-hydrogenase maturase HydG are catalytically differentiated events

▸ Abstract

Proc Natl Acad Sci U S A 2015;None(None):None-None | PubMed ID: 26699472

Suess DL, Pham CC, Bürstel I, Swartz JR, Cramer SP, Britt RD

The Radical SAM Enzyme HydG Requires Cysteine and a Dangler Iron for Generating an Organometallic Precursor to the [FeFe]-Hydrogenase H-Cluster

▸ Abstract

J Am Chem Soc 2016;138(4):1146-1149 | PubMed ID: 26764535

Gathering threshold Bit Score of 493 used; E-value of 1e-148

Static File Downloads

File Name Description Parameters Stats
network.fam319.bs60.mek250K.xgmml One node per sequence network min bit score = 60
max edge count = 250K
size = 127M
num_edges = 246753
num_nodes = 703
sfld_alignment_fam319.msa Annotated Sequence Alignment, Stockholm format 304 sequences
size: 317K

Total number of functional domains in this group.
Number of Functional Domains that have been manually or automatically been assigned to a family.
Number of Functional Domains that have not been assigned to a family.
Number of structures available from the PDB for members of this group.
Number of Functional Domains with 100% of Conserved Residues
Number of Functional Domains with less than 100% Conserved Residues

Active Site

Catalyzed Reaction(s)

HydG

2 + 2 + 2 + 2 + 2 + +
L-tyrosine zwitterion
58315
S-adenosyl-L-methionine zwitterion
59789
Fe4S4 iron-sulfur cluster
64607
p-cresol
17847
5'-deoxyadenosine
17319
L-methionine zwitterion
57844
Fe3S4 iron-sulfur cluster
64606
Fe(CO)2(CN)
85503

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