Family known  |
|||||||
| Total |
100% |
<100% |
Family unknown |
||||
| Functional domains | 861 | 0 | 0 | 861 | |||
| UniProtKB | 0 | 0 | 0 | 0 | |||
| GI | 0 | 0 | 0 | 0 | |||
| Structures | 0 | ||||||
| Reactions | 0 | ||||||
| Functional domains of this subgroup were last updated on Feb. 21, 2017 | |||||||
| New functional domains were last added to this subgroup on Nov. 25, 2014 | |||||||
The RutE subgroup is defined by the E. coli rutE gene, which is essential for the catabolism of uracil.
Parales, R. E. & Ingraham, J. L.
The surprising Rut pathway: an unexpected way to derive nitrogen from pyrimidines.
▸ Abstract
Journal of Bacteriology 2010;192(None):4086-4088 | PubMed ID: 20562306
Kim KS, Pelton JG, Inwood WB, Andersen U, Kustu S & Wemmer DE
The Rut pathway for pyrimidine degradation: novel chemistry and toxicity problems
▸ Abstract
Journal of Bacteriology 2010;192(None):4089-4102 | PubMed ID: 20400551
No notes.
Static File Downloads
| File Name | Description | Parameters | Stats |
|---|---|---|---|
| network.sg1231.bs60.mek250K.xgmml | One node per sequence network | min bit score = 60 max edge count = 250K |
size = 129M num_edges = 250000 num_nodes = 861 |
| repnet.sg1231.th50.pE20.mek250.xgmml | Representative network: each node is a group of similar sequences | node similarity threshold = 50 max edge count = 250 min -log10 E = 20 |
size = 787K num_edges = 703 num_nodes = 38 |
| sfld_alignment_sg1231.msa | Annotated Sequence Alignment, Stockholm format | 246 sequences size: 56K |
Total number of functional domains in this group.
Number of Functional Domains that have been manually or automatically been assigned to a family.
Number of Functional Domains that have not been assigned to a family.
Number of structures available from the PDB for members of this group.
Number of Functional Domains with 100% of Conserved Residues
Number of Functional Domains with less than 100% Conserved Residues
| Subgroup ▸ Legend | T |
K |
C |
U |
S |
||
|---|---|---|---|---|---|---|---|
| RutE | 861 | 0 | 0 | 861 | 0 | ||
| ┗ 1: RutE 2nd level subgroup 1 | 706 | 0 | 0 | 706 | 0 | ||
| ┗ 1: RutE 2nd level subgroup 2 | 155 | 0 | 0 | 155 | 0 |
Depth of the multi-level Subgroup hierarchy.