Top Level Name
⌊ Superfamily (core) Radical SAM
⌊ Subgroup SPASM/twitch domain containing
⌊ main SPASM domain-containing
⌊ Family heme D1 biosynthesis (NirJ-like)
Total |
100% ![]() |
<100% ![]() |
|||
Functional domains | 188 | 188 | 0 | ||
UniProtKB | 387 | 387 | 0 | ||
GI | 666 | 666 | 0 | ||
Structures | 0 | ||||
Reactions | 0 | ||||
Functional domains of this family were last updated on June 10, 2017 | |||||
New functional domains were last added to this family on June 22, 2014 |
Heme D1 occurs in the cytochrome Cd1 subunit of nitrite reductase in species such as Pseudomonas stutzeri. NirJ is involved in the transformation of precorrin-2 into heme d1, although its precise role in the process has not been established. In a number of species, distinct genes NirJ1 and NirJ2 are found in similar genomic regions. This family contains all the NirJ proteins.
Brindley AA, Zajicek R, Warren MJ, Ferguson SJ, Rigby SE
NirJ, a radical SAM family member of the d1 heme biogenesis cluster
▸ Abstract
FEBS Lett 2010;584(11):2461-2466 | PubMed ID: 20420837
NirJ which is involved in tetrapyrrole biosynthesis; it catalyzes the decarboxylation of siroheme to yield didecarboxysiroheme, which is then converted to Fe-coproporphyrin by oxidative decarboxylation of two acetyl side chains [41. Bali S, Lawrence AD, Lobo SA, Saraiva LM, Golding BT, et al. (2011) Molecular hijacking of siroheme for the synthesis of heme and d1 heme. Proc Natl Acad Sci U S A 108: 18260–18265. doi: 10.1073/pnas.1108228108. and 42. Lobo SA, Brindley A, Warren MJ, Saraiva LM (2009) Functional characterization of the early steps of tetrapyrrole biosynthesis and modification in Desulfovibrio vulgaris Hildenborough. Biochem J 420: 317–325. doi: 10.1042/bj20090151.
Static File Downloads
File Name | Description | Parameters | Stats |
---|---|---|---|
network.fam393.bs60.mek250K.xgmml | One node per sequence network | min bit score = 60 max edge count = 250K |
size = 9.3M num_edges = 17578 num_nodes = 188 |
sfld_alignment_fam393.msa | Annotated Sequence Alignment, Stockholm format | 257 sequences size: 112K |