Top Level Name

  ⌊ Superfamily (core) Radical SAM

    ⌊ Subgroup SPASM/twitch domain containing

  main SPASM domain-containing

  heme carboxy lyase like

     ⌊ Family heme D1 biosynthesis (NirJ-like)

Total 100% <100%
Functional domains 188 188 0
UniProtKB 387 387 0
GI 666 666 0
Structures 0
Reactions 0
Functional domains of this family were last updated on June 10, 2017
New functional domains were last added to this family on June 22, 2014

Heme D1 occurs in the cytochrome Cd1 subunit of nitrite reductase in species such as Pseudomonas stutzeri. NirJ is involved in the transformation of precorrin-2 into heme d1, although its precise role in the process has not been established. In a number of species, distinct genes NirJ1 and NirJ2 are found in similar genomic regions. This family contains all the NirJ proteins.

Brindley AA, Zajicek R, Warren MJ, Ferguson SJ, Rigby SE

NirJ, a radical SAM family member of the d1 heme biogenesis cluster

▸ Abstract

FEBS Lett 2010;584(11):2461-2466 | PubMed ID: 20420837

NirJ which is involved in tetrapyrrole biosynthesis; it catalyzes the decarboxylation of siroheme to yield didecarboxysiroheme, which is then converted to Fe-coproporphyrin by oxidative decarboxylation of two acetyl side chains [41. Bali S, Lawrence AD, Lobo SA, Saraiva LM, Golding BT, et al. (2011) Molecular hijacking of siroheme for the synthesis of heme and d1 heme. Proc Natl Acad Sci U S A 108: 18260–18265. doi: 10.1073/pnas.1108228108. and 42. Lobo SA, Brindley A, Warren MJ, Saraiva LM (2009) Functional characterization of the early steps of tetrapyrrole biosynthesis and modification in Desulfovibrio vulgaris Hildenborough. Biochem J 420: 317–325. doi: 10.1042/bj20090151.

Static File Downloads

File Name Description Parameters Stats
network.fam393.bs60.mek250K.xgmml One node per sequence network min bit score = 60
max edge count = 250K
size = 9.3M
num_edges = 17578
num_nodes = 188
sfld_alignment_fam393.msa Annotated Sequence Alignment, Stockholm format 257 sequences
size: 112K

Total number of functional domains in this group.
Number of Functional Domains that have been manually or automatically been assigned to a family.
Number of Functional Domains that have not been assigned to a family.
Number of structures available from the PDB for members of this group.
Number of Functional Domains with 100% of Conserved Residues
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