Total 100% <100%
Functional domains 49 49 0
UniProtKB 87 87 0
GI 187 187 0
Structures 0
Reactions 2
Functional domains of this family were last updated on June 10, 2017
New functional domains were last added to this family on June 22, 2014

This radical S-adenosylmethionine enzyme is encoded by the sbo-alb operon and comprises two [4Fe-4S] clusters. One [4Fe-4S] cluster is coordinated by the prototypical C[X]3C[X]2C motif and is responsible for the observed S-adenosylmethionine cleavage reaction, whereas the second [4Fe-4S] cluster is required for the generation of all three thioether linkages in subtilosin A. The mature subtilosin has been shown to display spermicidal activity and antimicrobial activity against a range og Gram-positive and Gram-negative bacteria.

Flühe L, Knappe TA, Gattner MJ, Schäfer A, Burghaus O, Linne U, Marahiel MA

The radical SAM enzyme AlbA catalyzes thioether bond formation in subtilosin A

▸ Abstract

Nat Chem Biol 2012;8(4):350-357 | PubMed ID: 22366720

Benjdia A, Guillot A, Lefranc B, Vaudry H, Leprince J, Berteau O

Thioether bond formation by SPASM domain radical SAM enzymes: Cα H-atom abstraction in subtilosin A biosynthesis

▸ Abstract

Chem Commun (Camb) 2016;52(37):6249-6252 | PubMed ID: 27087315

Initially, an electron from an external reducing agent (for example, sodium dithionite) is transferred to the first [4Fe-4S] cluster (coordinated by the CXXXCXXC motif) to convert it into its active reduced form. Subsequently, coordinated SAM is reductively cleaved into methionine and the 5'-dA radical by the transfer of the electron onto SAM. SboA coordinates with the unique iron of the second [4Fe-4S] cluster (coordinated by Cys408, Cys414, Cys417) via a thiol group of a cysteine residue, which is deprotonated upon binding to the cluster. The generated 5'-dA radical abstracts a hydrogen atom from the a-carbon of the threonine or phenylalanine residues. In the last step, the carbon-centered radical attacks the coordinated sulfur atom by forming the thioether bond, and the Fe-S cluster acts as the acceptor of the second electron. This reaction step is similar to the key aspect of the BioB- and isopenicillin N synthase–catalyzed reactions, which involve the attack of a carbon-centered radical on a sulfur atom that is ligated to an iron atom and acts as an electron acceptor. The reduced form of the second cluster may be able to transfer the electron to the first cluster via intramolecular electron channeling, converting both clusters into their active forms and preparing the enzyme for a second turnover. Alternatively, the electron from the second cluster may be transferred to an external one electron acceptor, in which case the first cluster must be reactivated by an external electron source for a second turnover, which is observed in the peptide modification assays when AlbA is used in catalytic amounts.

Static File Downloads

File Name Description Parameters Stats
network.fam315.bs60.mek250K.xgmml One node per sequence network min bit score = 60
max edge count = 250K
size = 693K
num_edges = 1176
num_nodes = 49
sfld_alignment_fam315.msa Annotated Sequence Alignment, Stockholm format 20 sequences
size: 14K

Total number of functional domains in this group.
Number of Functional Domains that have been manually or automatically been assigned to a family.
Number of Functional Domains that have not been assigned to a family.
Number of structures available from the PDB for members of this group.
Number of Functional Domains with 100% of Conserved Residues
Number of Functional Domains with less than 100% Conserved Residues

Catalyzed Reaction(s)

thioether cross-link between Cys and Thr

+ + + +
cysteine residue
32460
L-threonine residue
30013
S-adenosyl-L-methionine zwitterion
59789
Cys-Thr thioether
132254
5'-deoxyadenosine
17319
L-methionine zwitterion
57844

EC: | IntEnz: | Kegg: | BioCyc: | BRENDA: |

thioether cross-link between Cys and Phe

+ + + +
cysteine residue
32460
phenylalanine residue
32503
S-adenosyl-L-methionine zwitterion
59789
Cys-Phe thioether
132409
5'-deoxyadenosine
17319
L-methionine zwitterion
57844

EC: | IntEnz: | Kegg: | BioCyc: | BRENDA: |