Top Level Name

  ⌊ Superfamily (core) Enolase

    ⌊ Subgroup mandelate racemase

  ⌊ FunctionalDomain uncharacterized mandelate racemase subgroup sequence (ID 2579407)

Superfamily Assignment Evidence Code(s) IEA
This entry was last updated onNov. 21, 2017

References to Other Databases

Genbank

SpeciesGIAccessionProteome
Xanthomonas vesicatoria Taxon ID: 56460 746386646 WP_039429609.1 (RefSeq) URP
Xanthomonas vesicatoria Taxon ID: 56460 734004638 KHM90510.1 (Genbank) URP

Sequence

Length of Enzyme (full-length): 347 | Length of Functional Domain: 342

1       10        20        30        40        50        60

TNDSQLRWLGPEKGVMHMAIGAVINAAWDLAARAANKPLWRYISELTPEQLVDTIDFRYL
TDALTRDEALAILREAQPHRAQRIAQLIEQGYPAYTTSPGWLGYSDEKLVRLAKEAVADG
FRTIKLKVGANVQDDIRRCRLAREAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIAWI
EEPTSPDDVLGHAAIRQGITPVPVSTGEHTQNRVMFKQLLQAGAVDLIQIDAARVGGVNE
NLAILLLAAKFNVRVFPHAGGVGLCELVQHLAMADFVAITGQMEDRAIEFVDHLHQHFLD
PVRIQHGRYLAPEVPGFSAEMHASSIAEFSYPDGRFWVEDLAANRQG
This shows the full-length sequence of the enzyme. The region of the functional domain is highlighted in black letters, while the residual residues are shown in grey. The Superfamily domain, when present, is shown using underlining. In many cases the functional domain is the full-length sequence.
Conserved catalytic residues (as determined by automated alignment to family, subgroup, or superfamily HMMs) are shown with teal highlighting . Conserved catalytic residues which do not matched the Conserved Alignment Residue are shown with maroon highlighting . Information regarding their function can be found in the Conserved Residues section below.
FASTA formatted full-length sequence.
BLAST this sequence against SFLD.
Scan SFLD-HMMs with this sequence.

Conserved Residues
Superfamily CAR This EFD conserves 3/3 Superfamily-specific Conserved Alignment Residues.
Position Amino Acid Location Function Role Evidence Code Reference
155 Asp (D) side chain metal binding ligand metal ligand -- binding ISS PubMed:8987982
181 Glu (E) side chain metal binding ligand metal ligand -- binding ISS PubMed:8987982
208 Glu (E) side chain metal binding ligand metal ligand -- binding ISS PubMed:8987982
Subgroup CAR This EFD conserves 5/5 Subgroup-specific Conserved Alignment Residues.
Position Amino Acid Location Function Role Evidence Code Reference
155 Asp (D) side chain metal binding ligand metal ligand -- binding ICS
181 Glu (E) side chain metal binding ligand metal ligand -- binding ICS
208 Glu (E) side chain metal binding ligand metal ligand -- binding ICS
231 Asp (D) side chain controls pKa of catalytic His perturbates pKa -- spectator IDA
258 His (H) side chain proton abstraction (general base) proton relay -- reactant IDA

Structures

PDB ID Title Molecule Name Number of
EFDs		 Resolution (Å) Mutant? Het group Links
2HXT Crystal Structure Of L-Fuconate Dehydratase From Xanthomonas Campestris Liganded With Mg++ And D-Erythronohydroxamate L-Fuconate Dehydratase 31 1.7 Magnesium Ion • (2R,3R)-N,2,3,4-Tetrahydroxybutanamide CSA • PDB • PDBSum
2HNE Crystal Structure Of L-Fuconate Dehydratase From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 L-Fuconate Dehydratase 31 2.0 Magnesium Ion CSA • PDB • PDBSum
2HXU Crystal Structure Of K220A Mutant Of L-Fuconate Dehydratase From Xanthomonas Campestris Liganded With Mg++ And L-Fuconate L-Fuconate Dehydratase 25 1.8 Magnesium Ion
(2 more ⇓) 		CSA • PDB • PDBSum
Percent identity and alignment length from the BLAST match of the Functional Domain sequence to the PDB sequence.
"Yes" indicates that a GI associated with this Functional Domain was mapped to the PDB ID via UniProtKB.

Curation History
Time Change Annotation Old Value New Value
May 8, 2015, 5:05 a.m. update curation agent updateSuperfamily.py setDomainBoundaries.py
EC number assigned by UniProtKB accession ID.