Top Level Name
⌊ Superfamily (core) Radical SAM
⌊ FunctionalDomain uncharacterized SPL Subgroup subgroup sequence (ID 2074295)
No Notes.
| Superfamily Assignment Evidence Code(s) | IEA |
| This entry was last updated on | Dec. 10, 2016 |
References to Other Databases
Genbank
| Species | GI | Accession | Proteome |
|---|---|---|---|
| Geobacillus thermodenitrificans NG80-2 Taxon ID: 420246 | 395759475 | URP |
Length of Enzyme (full-length): 368 | Length of Functional Domain: 342
1 10 20 30 40 50 60
MKHHHHHHPMSDYDIPTTENLYFQGAMGKPFVPKLVYFEPEALSYPLGKELYEKFTQMGI
KIRETTSHNQVRGIPGETELARYRNAKSTLVVGVRRTLKFDSSKPSAEYAIPLATGCMGH
CHYCYLQTTLGSKPYIRVYVNLDDIFAQAQKYINERAPEITRFEAASTSDIVGIDHLTHS
LKKAIEFIGATDYGRLRFVTKYEHVDHLLDARHNGKTRFRFSINSRYVINHFEPGTSSFD
GRLAAARKVAGAGYKLGFVVAPIYRHEGWERGYFELFQELARQLEGMDLSDLTFELIQHR
FTKPAKRVIEQRYPKTRLDLDETKRKYKWGRYGIGKYVYRDEEAKELEDTMRRYIEQFFP
GAYVQYFT
This shows the full-length sequence of the enzyme.
The
region of the functional domain is highlighted in black letters,
while the
residual residues are shown in grey.
The Superfamily domain, when present, is
shown using underlining.
In many cases the functional domain is the full-length sequence.
Conserved catalytic residues (as determined by automated alignment to family, subgroup, or superfamily HMMs) are shown with teal highlighting . Conserved catalytic residues which do not matched the Conserved Alignment Residue are shown with maroon highlighting . Information regarding their function can be found in the Conserved Residues section below.
Conserved catalytic residues (as determined by automated alignment to family, subgroup, or superfamily HMMs) are shown with teal highlighting . Conserved catalytic residues which do not matched the Conserved Alignment Residue are shown with maroon highlighting . Information regarding their function can be found in the Conserved Residues section below.
FASTA formatted full-length sequence.
BLAST this sequence against SFLD.
Scan SFLD-HMMs with this sequence.