Top Level Name

  ⌊ Superfamily (core) Aromatic Prenyltransferase

Family known
Total 100% <100% Family unknown
Functional domains 339 0 0 339
UniProtKB 436 0 0 436
GI 798 0 0 798
Structures 27
Reactions 0
Functional domains of this superfamily were last updated on June 17, 2017
New functional domains were last added to this superfamily on July 3, 2013

This superfamily is also known as the ABBA (alpha-beta-beta-alpha) Fold superfamily. Characterized members catalyze the prenylation of phenols, naphthalenes, phenazines, indole, tyrosine, and xanthone derivatives.

Schuller JM, Zocher G, Liebhold M, Xie X, Stahl M, Li SM, Stehle T

Structure and catalytic mechanism of a cyclic dipeptide prenyltransferase with broad substrate promiscuity

▸ Abstract

J Mol Biol 2012;422(1):87-99 | PubMed ID: 22683356

No notes.

Sequence Similarity Networks

Download a Sequence Similarity Network of this superfamily (XGMML format ).

Network downloads are XGMML files that are readable by program such as Cytoscape. In these networks, nodes represent proteins and edges represent pairwise similarities better than a given edge-score cutoff. The edge score is either a bit score for full networks or mean E values for a Repnet. Additionally, these networks contain several attributes with data from the SFLD.

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Maximum number of edges:
250K 500K 750K ALL
edge-score cutoff

List of files included in the download. A detailed list of included node attributes, their definitions, and their uses [revised: 1/24/2014].

Disclaimer
Although the download speed has improved please keep in mind that network files can be quite large. We are currently working on improving the network download and finding ways to make large networks manageable. Please see How to increase memory for Cytoscape.

Multiple Sequence Alignment

View the alignment of a representative set of sequences of this superfamily using

Multiple Sequence Alignment

Align one or multiple sequences to the alignment of a representative set of sequences of this superfamily.
Enter FASTA formatted sequence(s) : and view results using

Downloads

Data Type All (#) Known (#) Unknown (#)
Full length FASTA (339) (0) (339)
Complete annotation (.tsv) (339) (0) (339)
Annotation suitable for Excel ® (.tsv) (339) (0) (339)
Clear form

Some of these files can be quite large, please be patient during the download.

To identify your sequence later, please make sure to provide a header line starting with '>' for each sequence. Empty headers are allowed, but a header line is always required.
Cutoff Value
The least significant edge-score at which pairwise similarities are included in the network. A bit score for the full network, or a mean E value for the Repnet.
XGMML format
Open in Cytoscape via:
 Menu
 →Import
 →Network (multiple file types)
Download the annotation of all sequences as shown in the table below as a ͟Tab ͟Separated ͟Value (TSV) file. This file can be imported into a spreadsheet application.
Full length FASTA
Full length sequences in FASTA format.
Functional Domain FASTA
Sequences of the Functional Domain in FASTA format.
Complete annotation
Download complete annotation of sequences sets of this superfamily as a ͟Tab ͟Separated ͟Value (TSV) file. This file has all data but cell size can exceed the maximum supported by spreadsheet programs (such as Microsoft Excel ®).
Spreadsheet ready annotation
Annotation of sequences sets of this superfamily in a ͟Tab ͟Separated ͟Value (TSV) file. This file can be imported into a spreadsheet application. Cells which exceed the allowed spreadsheet maximum (32.5K) are preceded by the word "Truncated" and clipped short.
Total number of functional domains in this group.
Number of Functional Domains that have been manually or automatically been assigned to a family.
Number of Functional Domains that have not been assigned to a family.
Number of structures available from the PDB for members of this group.
Number of Functional Domains with 100% of Conserved Residues
Number of Functional Domains with less than 100% Conserved Residues
Subgroup ▸ Legend T K C U S
I 310 0 0 310 16
II 29 0 0 29 11
Depth of the multi-level Subgroup hierarchy.